# ASAP Human Postmortem-Derived Brain Sequencing Collection (ASAP-PMDBS) Notebooks

* [**Data Overview**](../notebooks/asap_pmdbs_data_and_metadata.ipynb):
  Learn about the ASAP-PMDBS harmonized, single cell dataset including
  disease indicators and UMAP.
[*notebooks/asap_pmdbs_data_and_metadata.ipynb*]
* [**Mapping to the Whole Human Brain Taxonomy**](../notebooks/asap_pmdbs_siletti_taxonomy.ipynb):
  Explore the mapping of the ASAP-PMDBS cells to the Siletti, Whole Human Brain
  (WHB) taxonomy produced by MapMyCells.
[*notebooks/asap_pmdbs_siletti_taxonomy.ipynb*]
* [**Mapping to the SEA-AD**](../notebooks/asap_pmdbs_seaad_taxonomy.ipynb):
  Explore the mapping of the ASAP-PMDBS cells to the SEA-AD, Whole Human Brain 
  taxonomy produced by MapMyCells.
[*notebooks/asap_pmdbs_seaad_taxonomy.ipynb*]
* [**10X Gene Expression**](../notebooks/asap_pmdbs_gene_expression.ipynb):
  Learn how to extract gene expression data for specific genes and visualize
  them in a UMAP.
[*notebooks/asap_pmdbs_gene_expression.ipynb*]